MirGeneDB ID | Ete-Mir-376-P4 |
Family name |
MIR-376 (all species) |
Seed |
ACAUAGA |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-376-P1
Ete-Mir-376-P3
|
Orthologues |
Bta-Mir-376-P4
Cfa-Mir-376-P4
Cpo-Mir-376-P4
Dno-Mir-376-P4
Hsa-Mir-376-P4
Mml-Mir-376-P4
Mmu-Mir-376-P4
Ocu-Mir-376-P4
Rno-Mir-376-P4
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980297: 82299763-82299820 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
AGGACUAAAUCCUUCUUUGGUAUUUAAAAGGUGGAUAUUCCUUCUAUGUUUAUGUUCUUUGUGGUUAAACAUAGAGGAAAUUCCACAUUUUCAGUAUCAAAUGCUGCUAGGGUGCAGU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGGACUAAAUCCUUCUU--| U G UA U UGUUCU
UGGUAUU AAAA GUGGA UUCCU CUAUGUUUA \
ACUAUGA UUUU CACCU AAGGA GAUACAAAU U
UGACGUGGGAUCGUCGUAA^ C A UA - UGGUGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Ete-Mir-376-P4_5p* |
mirBase accession | None |
Sequence |
0- GUGGAUAUUCCUUCUAUGUUUA -22
Get sequence
|
Mature sequence |
Ete-Mir-376-P4_3p |
mirBase accession | None |
Sequence |
37- AACAUAGAGGAAAUUCCACAU -58
Get sequence
|