MirGeneDB 2.1

MirGeneDB ID

Gja-Mir-456

Family name MIR-456 (all species)
Seed AGGCUGG
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-456  Ami-Mir-456  Cli-Mir-456  Cmi-Mir-456  Cpi-Mir-456  Dre-Mir-456  Ebu-Mir-456  Gga-Mir-456  Gmo-Mir-456  Lch-Mir-456  Loc-Mir-456  Mal-Mir-456  Mun-Mir-456  Pbv-Mir-456  Pma-Mir-456  Sto-Mir-456  Tgu-Mir-456  Xla-Mir-456-P1  Xla-Mir-456-P2  Xtr-Mir-456 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015177062.1: 49611-49671 [+]
Precursor
(pre-Mir +30nt flank)
AAACUGUGUUUUGUGUGUGUGUGUGUGUGAGCAGGCAUCUUUUCAGCCUACAUGUGGAUUCCUAAAUCUGCAGGCUGGUUAGAUGGUUGUCAUACAUUCAUUUGAUAUCCACUUAAAUGUA
Get precursor sequence
Structure
        10          20        30        40        50        60
AAACUGUGUUUUGUGUGU--|  U        G   G     UU       A  UGUGGAU 
                    GUG GUGUGUGA CAG CAUCU  UCAGCCU CA       U
                    UAC UACAUACU GUU GUAGA  GGUCGGA GU       C
AUGUAAAUUCACCUAUAGUU^  U        -   G     UU       C  CUAAAUC 
 .       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Gja-Mir-456_5p* (predicted)

mirBase accessionNone
Sequence
0- GCAGGCAUCUUUUCAGCCUACA -22
Get sequence
Mature sequence

Gja-Mir-456_3p

mirBase accessionNone
Sequence
40- CAGGCUGGUUAGAUGGUUGUC -61
Get sequence