| MirGeneDB ID | Gmo-Mir-11230 |
|---|
| Family name |
MIR-11230 (all species) |
|---|
| Seed |
AAACCGC |
|---|
| Species |
Cod (Gadus morhua) |
|---|
| MiRBase ID |
gmo-mir-11230
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
G. morhua
|
|---|
| Node of Origin (family) |
G. morhua
|
|---|
Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1770: 375102-375158 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUUGUACAUCGCCAUUUGCCUAUCACAUUUCAAACCGCCAAGCAGGCGAACUUUGUUGAUGCAAGUUCGCCUGUUCGGCGGUUGAAAAUGUGAACGGUUAACGGCGUUAACCGUUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUGUACAUCGCCAUUU--| UA CA A UUGUU
GCC UCACAUUU AACCGCC AGCAGGCGAACU \
UGG AGUGUAAA UUGGCGG UUGUCCGCUUGA G
UUUUGCCAAUUGCGGCAAU^ CA AG C ACGUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Mirbase gives the reverse complement of this gene. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Gmo-Mir-11230_5p |
| mirBase accession | MIMAT0044400 |
|---|
| Sequence |
0- CAAACCGCCAAGCAGGCGAACU -22
Get sequence
|
|---|
| Star sequence |
Gmo-Mir-11230_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UUCGCCUGUUCGGCGGUUGAAA -57
Get sequence
|
|---|
