| MirGeneDB ID | Gmo-Mir-11937 |
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| Family name |
MIR-11937 (all species) |
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| Seed |
GAAGACC |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-11937
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
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| Node of Origin (family) |
G. morhua
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1180: 179573-179639 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUUUUUGCCUGCUCUUUCUGAGCGUCCGUCCGAAGACCGCGACGUCUGGCCUGGACACACUUGACGUGUCGCCGUGCCAGACGUCACGUUCUUCAGACGGACGGUCGGACGCUUCUUCGUCUGCCGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CUUUUUGCCUGCUCUUU--| G C C C CUGGACACACUU
CUGA CGUCCGUC GAAGA CG GACGUCUGGC \
GGCU GCAGGCAG CUUCU GC CUGCAGACCG G
UGCCGUCUGCUUCUUCGCA^ G A U A UGCCGCUGUGCA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Gmo-Mir-11937_5p |
| mirBase accession | MIMAT0046073 |
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| Sequence |
0- CGAAGACCGCGACGUCUGGCCU -22
Get sequence
|
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| Star sequence |
Gmo-Mir-11937_3p* |
| mirBase accession | MIMAT0046074 |
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| Sequence |
45- GCCAGACGUCACGUUCUUCAGA -67
Get sequence
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