| MirGeneDB ID | Gmo-Mir-1388 |
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| Family name |
MIR-1388 (all species) |
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| Seed |
UCUCAGG |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-1338
|
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| Paralogues |
|
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| Orthologues |
Aca-Mir-1388
Ami-Mir-1388
Bta-Mir-1388
Cfa-Mir-1388
Cli-Mir-1388
Cmi-Mir-1388
Cpi-Mir-1388
Cpo-Mir-1388
Dno-Mir-1388
Dre-Mir-1388
Ete-Mir-1388
Gga-Mir-1388
Gja-Mir-1388
Lch-Mir-1388
Loc-Mir-1388
Mal-Mir-1388
Mdo-Mir-1388
Mun-Mir-1388
Oan-Mir-1388-v1
Oan-Mir-1388-v2
Pbv-Mir-1388
Sha-Mir-1388
Spt-Mir-1388
Sto-Mir-1388
Tgu-Mir-1388
Tni-Mir-1388
Xla-Mir-1388-P1
Xla-Mir-1388-P2
Xtr-Mir-1388
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Gnathostomata
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_370: 43931-43989 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UGGUUUCUCCUCUAUUGGGUGGUUCUUUCCAGGACUGUCACACCUGAGCAUGGUACCUUGAGGCUCAAUCUCAGGUUUGUCAGCCCAUGAAAUGCUUACUCGUCUCAGCGUAGCACGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGUUUCUCCUCUAUUG-- -| UC CA A U C C GGUACCU
GGU GGU UUUC GG CUG CA ACCUGAG AU U
UCA UCG AAAG CC GAC GU UGGACUC UA G
AAGCACGAUGCGACUCUGC U^ U- UA C U U - ACUCGGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Gmo-Mir-1388_5p* |
| mirBase accession | MIMAT0044237 |
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| Sequence |
0- AGGACUGUCACACCUGAGCAUG -22
Get sequence
|
|---|
| Mature sequence |
Gmo-Mir-1388_3p |
| mirBase accession | MIMAT0044238 |
|---|
| Sequence |
37- AUCUCAGGUUUGUCAGCCCAUG -59
Get sequence
|
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