MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-1388

Family name MIR-1388 (all species)
Seed UCUCAGG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-1338
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_370: 43931-43989 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGUUUCUCCUCUAUUGGGUGGUUCUUUCCAGGACUGUCACACCUGAGCAUGGUACCUUGAGGCUCAAUCUCAGGUUUGUCAGCCCAUGAAAUGCUUACUCGUCUCAGCGUAGCACGAA
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Structure
        10          20         30        40        50         
UGGUUUCUCCUCUAUUG--   -|  UC    CA  A   U  C       C  GGUACCU 
                   GGU GGU  UUUC  GG CUG CA ACCUGAG AU       U
                   UCA UCG  AAAG  CC GAC GU UGGACUC UA       G
AAGCACGAUGCGACUCUGC   U^  U-    UA  C   U  U       -  ACUCGGA 
       110       100         90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-1388_5p*
mirBase accessionMIMAT0044237
Sequence 
0- AGGACUGUCACACCUGAGCAUG -22
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Mature sequence

Gmo-Mir-1388_3p
mirBase accessionMIMAT0044238
Sequence 
37- AUCUCAGGUUUGUCAGCCCAUG -59
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