MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-455-P1

Family name MIR-455 (all species)
Seed AUGUGCC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-455
Paralogues Gmo-Mir-455-P2 
Orthologues Aca-Mir-455  Ami-Mir-455  Bta-Mir-455  Cfa-Mir-455  Cli-Mir-455  Cmi-Mir-455  Cpi-Mir-455  Cpo-Mir-455  Dno-Mir-455  Dre-Mir-455-P1  Ete-Mir-455  Gga-Mir-455  Gja-Mir-455  Hsa-Mir-455  Lch-Mir-455  Loc-Mir-455  Mal-Mir-455-P1  Mdo-Mir-455  Mml-Mir-455  Mmu-Mir-455  Mun-Mir-455  Oan-Mir-455  Ocu-Mir-455  Pbv-Mir-455  Pma-Mir-455  Rno-Mir-455  Sha-Mir-455  Spt-Mir-455  Sto-Mir-455  Tgu-Mir-455  Tni-Mir-455-P1  Xtr-Mir-455 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_3249: 210641-210699 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGAGGUCUCCAGACAUCCCUGACGUGGGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUACCUCAAGGCUUGGGUCGCCAUUACCAU
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Structure
        10           20        30        40        50        
CGAGGUCUCCAGACAUC--  -|  C     G          U      A   C UGGAA 
                   CC UGA GUGGG GUAUGUGCCC UGGACU CAU G     G
                   GG ACU CAUUC CAUAUACGGG ACCUGA GUA C     C
UACCAUUACCGCUGGGUUC  A^  C     A          U      C   C ACGAC 
       110       100        90        80        70        60
Deep sequencing
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CommentThere are mutliple Dicer cuts on the 3p arm relative to what is annotated here. P1 is GeneScaffold_3249
3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-455-P1_5p

mirBase accessionMIMAT0044214
Sequence
0- UAUGUGCCCUUGGACUACAUCG -22
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Star sequence

Gmo-Mir-455-P1_3p*

mirBase accessionMIMAT0044215
Sequence
36- AUGCAGUCCAUGGGCAUAUACAC -59
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