MirGeneDB ID | Gmo-Mir-455-P1 |
Family name |
MIR-455 (all species) |
Seed |
AUGUGCC |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-455
|
Paralogues |
Gmo-Mir-455-P2
|
Orthologues |
Aca-Mir-455
Ami-Mir-455
Bta-Mir-455
Cfa-Mir-455
Cli-Mir-455
Cmi-Mir-455
Cpi-Mir-455
Cpo-Mir-455
Dno-Mir-455
Dre-Mir-455-P1
Ete-Mir-455
Gga-Mir-455
Gja-Mir-455
Hsa-Mir-455
Lch-Mir-455
Loc-Mir-455
Mal-Mir-455-P1
Mdo-Mir-455
Mml-Mir-455
Mmu-Mir-455
Mun-Mir-455
Oan-Mir-455
Ocu-Mir-455
Pbv-Mir-455
Pma-Mir-455
Rno-Mir-455
Sha-Mir-455
Spt-Mir-455
Sto-Mir-455
Tgu-Mir-455
Tni-Mir-455-P1
Xtr-Mir-455
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_3249: 210641-210699 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGAGGUCUCCAGACAUCCCUGACGUGGGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUACCUCAAGGCUUGGGUCGCCAUUACCAU
Get precursor sequence
|
Structure | 10 20 30 40 50
CGAGGUCUCCAGACAUC-- -| C G U A C UGGAA
CC UGA GUGGG GUAUGUGCCC UGGACU CAU G G
GG ACU CAUUC CAUAUACGGG ACCUGA GUA C C
UACCAUUACCGCUGGGUUC A^ C A U C C ACGAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There are mutliple Dicer cuts on the 3p arm relative to what is annotated here. P1 is GeneScaffold_3249 |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Gmo-Mir-455-P1_5p |
mirBase accession | MIMAT0044214 |
Sequence |
0- UAUGUGCCCUUGGACUACAUCG -22
Get sequence
|
Star sequence |
Gmo-Mir-455-P1_3p* |
mirBase accession | MIMAT0044215 |
Sequence |
36- AUGCAGUCCAUGGGCAUAUACAC -59
Get sequence
|