MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-460-P1

Family name MIR-460 (all species)
Seed CUGCAUU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-460
Paralogues Gmo-Mir-460-P2 
Orthologues Aca-Mir-460-P1  Ami-Mir-460-P1  Cli-Mir-460-P1  Cpi-Mir-460-P1  Dre-Mir-460-P1  Gga-Mir-460-P1  Gja-Mir-460-P1  Lch-Mir-460-P1  Loc-Mir-460-P1  Mal-Mir-460-P1  Mdo-Mir-460-P1  Mun-Mir-460-P1  Neu-Mir-460-P1  Oan-Mir-460-P1  Sha-Mir-460-P1  Spt-Mir-460-P1  Tgu-Mir-460-P1  Tni-Mir-460-P1  Xla-Mir-460-P1a  Xla-Mir-460-P1b  Xtr-Mir-460-P1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_377: 671954-672012 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGAGCAAUGAGGUGAUGGGCCUUACAGCCCCUGCAUUGUACACACUGUGCAUAUUUGUCAACAGAGCACAGCGCAUACAAUGUGGAUGCUGUGAUACCAAAUUUCCUUCUCUUGUUUC
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Structure
        10          20        30        40        50         
AUGAGCAAUGAGGUGAUG--| CC       CC UG       CACA      AUAUUUG 
                    GG  UUACAGC  C  CAUUGUA    CUGUGC       \
                    CC  AGUGUCG  G  GUAACAU    GACACG       U
CUUUGUUCUCUUCCUUUAAA^ AU       UA GU       ACGC      AGACAAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-460-P1_5p
mirBase accessionMIMAT0044248
Sequence 
0- CCUGCAUUGUACACACUGUGCA -22
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Co-mature sequence

Gmo-Mir-460-P1_3p
mirBase accessionMIMAT0044249
Sequence 
37- CACAGCGCAUACAAUGUGGAUG -59
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