MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-460-P2

Family name MIR-460 (all species)
Seed CCUCAUU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-730
Paralogues Gmo-Mir-460-P1 
Orthologues Aca-Mir-460-P2  Ami-Mir-460-P2  Cli-Mir-460-P2  Cpi-Mir-460-P2  Dre-Mir-460-P2  Gga-Mir-460-P2  Gja-Mir-460-P2  Lch-Mir-460-P2  Loc-Mir-460-P2  Mal-Mir-460-P2  Mun-Mir-460-P2  Spt-Mir-460-P2  Tgu-Mir-460-P2  Tni-Mir-460-P2a  Tni-Mir-460-P2b  Xla-Mir-460-P2c  Xla-Mir-460-P2d  Xtr-Mir-460-P2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_3838: 253111-253176 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGCGCUGCCAGGUGUGUGUGUUGCGGUGUCCUCAUUGUGCAUGCUGUGUGUGUGUGUUUAUCCGAGUUCGCCCACAGCGCCUGCAAUGAGGAGGCUGCAGCGCACCGGACCUCACACGUGCACG
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Structure
        10          20        30        40        50        60  
UGUGCGCUGCCAGGUGU--|           G           CA       U UGUGUGUUU 
                   GUGUGUUGCGGU UCCUCAUUGUG  UGCUGUG G         A
                   CACGCGACGUCG AGGAGUAACGU  GCGACAC C         U
GCACGUGCACACUCCAGGC^           G           CC       C GCUUGAGCC 
    120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-460-P2_5p
mirBase accessionMIMAT0044256
Sequence 
0- UCCUCAUUGUGCAUGCUGUGUG -22
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Star sequence

Gmo-Mir-460-P2_3p*
mirBase accessionNone
Sequence 
44- CACAGCGCCUGCAAUGAGGAGG -66
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