| MirGeneDB ID | Gmo-Mir-7133 |
|---|
| Family name |
MIR-7133 (all species) |
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| Seed |
AUGCUGA |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-7133
|
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| Paralogues |
|
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| Orthologues |
Dre-Mir-7133
Mal-Mir-7133
Tni-Mir-7133
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Clupeocephala
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1196: 73701-73762 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCCUCCGAGAUGCCCUCAAGGAAUGGCUCUGAUGCUGAGGUUCAAACUGUAUGUGUGUAUUGGUCCAGUAUAGUUUGAUCCACAGCACAAAGAGCCUUUCCUUAAAAACACAAAAACACACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCCUCCGAGAUGCCCUC-- U GA-| A U GUGUGUA
AAGGAA GGCUCU UGCUG GG UCAAACUGUAU \
UUCCUU CCGAGA ACGAC CC AGUUUGAUAUG U
ACACACAAAAACACAAAAA U AAC^ A U ACCUGGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Gmo-Mir-7133_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GAUGCUGAGGUUCAAACUGUAU -22
Get sequence
|
|---|
| Star sequence |
Gmo-Mir-7133_3p* |
| mirBase accession | MIMAT0044111 |
|---|
| Sequence |
40- UAGUUUGAUCCACAGCACAAAG -62
Get sequence
|
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