MirGeneDB 2.1

MirGeneDB ID

Hme-Mir-92-o56

Family name MIR-92 (all species)
Seed AUUGCAC
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-92a
Paralogues Hme-Mir-92-o57 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) H. melpomene
Node of Origin (family) Bilateria
Genome context
(Hmel_1)
HE672043: 128928-128983 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o56)
Mir-92-o56 HE672043: 128928-128983 [+] Ensembl
Mir-92-o57 HE672043: 129073-129130 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGUCAGUUCGUCUCAGAGGCCCGGGUGGCUGGGCGGUGAUUGGCGCUAUAUUAUGUGUGUACAAUAUUGCACCAGUCCCGGCCUAUCCAAACGGGCCGGCCUCCGGAGACCGCUAC
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Structure
        10          20        30         40        50       
AGUCAGUUCGUCUCAGA--      GG   C    -|  U      C  U     AUGU 
                   GGCCCG  UGG UGGG CGG GAUUGG GC AUAUU    G
                   CCGGGC  ACC AUCC GCC CUGACC CG UAUAA    U
CAUCGCCAGAGGCCUCCGG      AA   U    G^  -      A  U     CAUG 
    110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsNo
Tissue expression
 +
Ad Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-92-o56_5p*

mirBase accessionNone
Sequence
0- GGGCGGUGAUUGGCGCUAUAUU -22
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Mature sequence

Hme-Mir-92-o56_3p

mirBase accessionMIMAT0024993
Sequence
34- UAUUGCACCAGUCCCGGCCUAU -56
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