Mir-506-P29

MirGeneDB ID

Hsa-Mir-506-P29

Family name

MIR-506 (all species)

Seed

GAUUGAA

Species

Human (Homo sapiens)

MiRBase ID

Paralogues

Hsa-Mir-506-P1 Hsa-Mir-506-P2 Hsa-Mir-506-P3 Hsa-Mir-506-P4a1 Hsa-Mir-506-P4a2 Hsa-Mir-506-P4b Hsa-Mir-506-P5 Hsa-Mir-506-P6a1 Hsa-Mir-506-P6a2 Hsa-Mir-506-P6b Hsa-Mir-506-P6c Hsa-Mir-506-P7a Hsa-Mir-506-P7b Hsa-Mir-506-P7c Hsa-Mir-506-P8 Hsa-Mir-506-P9 Hsa-Mir-506-P10 Hsa-Mir-506-P11 Hsa-Mir-506-P12 Hsa-Mir-506-P13

Orthologues

Mml-Mir-506-P29

Node of Origin (locus)

Catarrhini

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 147255308-147255368 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P29)

Mir-506-P6a2 chrX: 147213498-147213555 [-] UCSC Ensembl
Mir-506-P6a1 chrX: 147225860-147225917 [-] UCSC Ensembl
Mir-506-P1 chrX: 147230753-147230809 [-] UCSC Ensembl
Mir-506-P2 chrX: 147231002-147231059 [-] UCSC Ensembl
Mir-506-P3 chrX: 147236945-147237002 [-] UCSC Ensembl
Mir-506-P8 chrX: 147250161-147250218 [-] UCSC Ensembl
Mir-506-P4a2 chrX: 147258774-147258831 [-] UCSC Ensembl
Mir-506-P4b chrX: 147259661-147259717 [-] UCSC Ensembl
Mir-506-P4a1 chrX: 147260549-147260606 [-] UCSC Ensembl
Mir-506-P5 chrX: 147272342-147272399 [-] UCSC Ensembl
Mir-506-P7a chrX: 147279266-147279323 [-] UCSC Ensembl
Mir-506-P7c chrX: 147281957-147282014 [-] UCSC Ensembl
Mir-506-P7b chrX: 147284655-147284712 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAUCCUUAGACAUGCUGUCUGCGGGGCCUUACUCGAGAGAGUAGCAAUCACAUAUGGUAAUGACAUAUGAUUGAAACCUCUACGAGUGGUGUAACACGUGACAUAUGCAGCAUAUGUAAU

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Structure

        10         20          30         40        50          
CCAUCCUUAGACAUGCU-   U   GG--  C       -|   A  AG      CAUAUGGU 
                  GUC GCG    GC UUACUCG AGAG GU  CAAUCA        \
                  CAG UGC    UG GGUGAGC UCUC CA  GUUAGU        A
UAAUGUAUACGACGUAUA   -   ACAA  U       A^   -  AA      AUACAGUA 
 .       110        100        90        80         70

Deep sequencing

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	3-	3-	3-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	5-	5-	5-	5-	5-	5-	5-	6-	6-	6-	6-	6-

Star sequence

Hsa-Mir-506-P29_5p* (predicted)

mirBase accession

None

Sequence

0- UACUCGAGAGAGUAGCAAUCACA -23

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Mature sequence

Hsa-Mir-506-P29_3p (predicted)

mirBase accession

None

Sequence

38- UGAUUGAAACCUCUACGAGUGGU -61

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