MirGeneDB 2.1

MirGeneDB ID

Lan-Mir-2-o77a

Family name MIR-2 (all species)
Seed AUCACAG
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-2-o71  Lan-Mir-2-o72a  Lan-Mir-2-o72b  Lan-Mir-2-o73  Lan-Mir-2-o74  Lan-Mir-2-o75  Lan-Mir-2-o76  Lan-Mir-2-o77b  Lan-Mir-2-o78  Lan-Mir-2-o79 
Orthologues
Node of Origin (locus) L. anatina
Node of Origin (family) Protostomia
Genome context
(LinAna_1.0)
LFEI01002046: 29074-29133 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGUUGAGAUGAGACAAGUGUGUUGUGUGGCUGGUCAAAGUGGUUGUGACAGGGUGUGCUAGCUUUCCUAUCACAGCCUGCUUUGAUGAGCUAUACACAACACCAGACGACUGCCACUGGC
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Structure
        10        20          30        40         50         
AGUUGAGAUGAGACAAGU         --    G        -|       C   GUGUGC 
                  GUGUUGUGU  GGCU GUCAAAGU GGUUGUGA AGG      \
                  CACAACACA  UCGA UAGUUUCG CCGACACU UCC      U
CGGUCACCGUCAGCAGAC         UA    G        U^       A   UUUCGA 
.       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
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Star sequence

Lan-Mir-2-o77a_5p* (predicted)

mirBase accessionNone
Sequence
0- UGGUCAAAGUGGUUGUGACAGG -22
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Mature sequence

Lan-Mir-2-o77a_3p

mirBase accessionNone
Sequence
37- UAUCACAGCCUGCUUUGAUGAGC -60
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