| MirGeneDB ID | Lan-Mir-2-o79 |
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| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Lingula (Lingula anatina) |
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| MiRBase ID |
|
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| Paralogues |
Lan-Mir-2-o71
Lan-Mir-2-o72a
Lan-Mir-2-o72b
Lan-Mir-2-o73
Lan-Mir-2-o74
Lan-Mir-2-o75
Lan-Mir-2-o76
Lan-Mir-2-o77a
Lan-Mir-2-o77b
Lan-Mir-2-o78
|
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| Orthologues |
|
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| Node of Origin (locus) |
L. anatina
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(LinAna_1.0) |
LFEI01000806: 164633-164697 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
ACGGGUUUGCUGAUACCAUGCAGUCCUCAUCCAUCAAAGUGGCUGUGAAGCAAUGAUAUUGUCUACUGUUGUAUCACAGCCCCGCUUUGAUGAGCUGAGAUUCUGCAGUCGUUCUACCAUAACCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
ACGGGUUUGCUGAUACCA UC- UC- --| A AUGAUAUU
UGCAG CUCA CAUCAAAGU GGCUGUGA GCA \
ACGUC GAGU GUAGUUUCG CCGACACU UGU G
CCCAAUACCAUCUUGCUG UUA CGA CC^ A UGUCAUCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Lan-Mir-2-o79_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CCAUCAAAGUGGCUGUGAAGCA -22
Get sequence
|
|---|
| Mature sequence |
Lan-Mir-2-o79_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UAUCACAGCCCCGCUUUGAUGAGC -65
Get sequence
|
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