| MirGeneDB ID | Lch-Mir-103-P2 |
|---|---|
| Family name | MIR-103 (all species) |
| Seed | GCAGCAU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-103-P1 Lch-Mir-103-P4 |
| Orthologues | Aca-Mir-103-P2 Ami-Mir-103-P2 Bta-Mir-103-P2 Cfa-Mir-103-P2 Cja-Mir-103-P2 Cli-Mir-103-P2 Cmi-Mir-103-P2 Cpi-Mir-103-P2 Cpo-Mir-103-P2 Dno-Mir-103-P2 Dre-Mir-103-P2a Dre-Mir-103-P2b Eca-Mir-103-P2 Ete-Mir-103-P2 Gga-Mir-103-P2 Gja-Mir-103-P2 Gmo-Mir-103-P2a Gmo-Mir-103-P2b Hmi-Mir-103 Hsa-Mir-103-P2 Laf-Mir-103-P2 Loc-Mir-103-P2 Mal-Mir-103-P2a Mal-Mir-103-P2b Mdo-Mir-103-P2 Mml-Mir-103-P2 Mmr-Mir-103-P2 Mmu-Mir-103-P2 Mun-Mir-103-P2 Neu-Mir-103-P2 Oan-Mir-103-P2 Ocu-Mir-103-P2 Pab-Mir-103-P2 Pbv-Mir-103-P2 Pfl-Mir-103 Pma-Mir-103-o2 Pmi-Mir-103 Rno-Mir-103-P2 Sha-Mir-103-P2 Sko-Mir-103 Spt-Mir-103-P2 Spu-Mir-103 Sro-Mir-103 Sto-Mir-103-P2 Tgu-Mir-103-P2 Tni-Mir-103-P2a Tni-Mir-103-P2b Xbo-Mir-103 Xla-Mir-103-P2c Xla-Mir-103-P2d Xtr-Mir-103-P2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
BAHO01049067.1: 369-428 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | UUCAGGAGACUGUAUGAGUUCUGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUAGCAUCAAUGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAGCUGAGCCUUAAGCUUCGAAAUAAAGGet precursor sequence |
| Structure | 10 20 30 40 50 UUCAGGAGACUGUAUGA-- U G --| U U C UAGCA GUUC GU CUUUC AGCU CU UACAGUGCUGC UUG U CGAG CG GAAAG UCGG GA AUGUUACGACG AAC C GAAAUAAAGCUUCGAAUUC U A UA^ - C - UGUAA . 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | Not in assembly but in trace archives. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-103-P2_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGCUUCUUUACAGUGCUGCCUUG -23
Get sequence
|
| Mature sequence | Lch-Mir-103-P2_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- AGCAGCAUUGUACAGGGCUAUGA -60
Get sequence
|
