MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-460-P2

Family name MIR-460 (all species)
Seed CCUCAUU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-460-P1 
Orthologues Aca-Mir-460-P2  Ami-Mir-460-P2  Cli-Mir-460-P2  Cpi-Mir-460-P2  Dre-Mir-460-P2  Gga-Mir-460-P2  Gja-Mir-460-P2  Gmo-Mir-460-P2  Loc-Mir-460-P2  Mal-Mir-460-P2  Mun-Mir-460-P2  Spt-Mir-460-P2  Tgu-Mir-460-P2  Tni-Mir-460-P2a  Tni-Mir-460-P2b  Xla-Mir-460-P2c  Xla-Mir-460-P2d  Xtr-Mir-460-P2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(LatCha1_add)
JH128873.1: 172331-172388 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUGUUGGAGUGAAAAUGGCUCUACAUUGUCCUCAUUGUACAUGCUGUGUGUAUUCCAUUACAUACACAGCGCAUACAAUGUGGAUAUCGUCGAGACCAAAAUACAACUGUAAUUUG
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Structure
        10         20         30        40        50        
AUCUGUUGGAGUGAAAA-   -|  U  AU     U       CA         UAUUC 
                  UGG CUC AC  UGUCC CAUUGUA  UGCUGUGUG     C
                  ACC GAG UG  AUAGG GUAACAU  GCGACACAU     A
GUUUAAUGUCAACAUAAA   A^  C  CU     U       AC         ACAUU 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-460-P2_5p (predicted)

mirBase accessionNone
Sequence
0- UCCUCAUUGUACAUGCUGUGUG -22
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Star sequence

Lch-Mir-460-P2_3p* (predicted)

mirBase accessionNone
Sequence
36- CACAGCGCAUACAAUGUGGAUA -58
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