| MirGeneDB ID | Lgi-Novel-1 |
|---|
| Family name |
LGI-NOVEL-1 (all species) |
|---|
| Seed |
CAAACAU |
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| Species |
Owl limpet (Lottia gigantea) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
L. gigantea
|
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| Node of Origin (family) |
L. gigantea
|
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Genome context
(Lotgi1) |
LOTGIsca_115: 803487-803546 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUGAAGACACAGGAACCAAUAUUGAGGGAGCUUGCCAAUGUCUUGUUUUCUGAUUAAAAUUUAACUCACAAACAUCACAUUUGUAAGGUUUCCACUUUAUUACCUACAACAUCAUUUAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUGAAGACACAGGAACCAAUAUUGA-- -| C CU UC UUAAA
GGGAG CUUGC AAUGU UGUUU UGA A
CCUUU GAAUG UUACA ACAAA ACU U
AGAUUUACUACAACAUCCAUUAUUUCA G^ U CU C- CAAUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Lgi-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUUGCCAAUGUCUUGUUUUCUGA -23
Get sequence
|
|---|
| Mature sequence |
Lgi-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- ACAAACAUCACAUUUGUAAGGUU -60
Get sequence
|
|---|
