| MirGeneDB ID | Loc-Mir-7147 |
|---|
| Family name |
MIR-7147 (all species) |
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| Seed |
GUACCAU |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cpi-Mir-7147
Dre-Mir-7147
Lch-Mir-7147
Mal-Mir-7147
Tni-Mir-7147
Xla-Mir-7147-P1
Xla-Mir-7147-P2
Xtr-Mir-7147
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| Node of Origin (locus) |
Osteichthyes
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| Node of Origin (family) |
Osteichthyes
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Genome context
(LepOcu1) |
LG9: 32843297-32843354 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUGCAGUUCUGCCUUCAGAGUUGCCAGUGCUGUACCAUGCUGGUAGCCAGUGUGAACUAGGCCUUGCUGGUAACCAGUGUUGUGCCUCACUGACUGCUCAGUGUAAUGCCAAUUAGAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGCAGUUCUGCCUUCA--| UGC CU C A UGAAC
GAGU CAGUG GUAC AUGCUGGU GCCAGUG U
CUCG GUCAC CGUG UGUGACCA UGGUCGU A
CAGAUUAACCGUAAUGUGA^ UCA UC U A UCCGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | No |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Mature sequence |
Loc-Mir-7147_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUACCAUGCUGGUAGCCAGUG -22
Get sequence
|
|---|
| Star sequence |
Loc-Mir-7147_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CUGGUAACCAGUGUUGUGCCUC -58
Get sequence
|
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