MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-722-v2

Family name MIR-722 (all species)
Seed UUGCAGA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-722-v1 
Orthologues Lch-Mir-722 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(LepOcu1)
LG10: 41985440-41985504 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCUUUGCCAAGAGACUGGAACAGAAUGGAAUUUGAAACGUUUUAGCCAAAAAUGUUUCCAUGGUAAAGGUGUUUUUUGCAGAAACGUUUCAGAUUUCGUUCCGUUCUCCAACUUCGGCCCGGAAC
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Structure
        10          20        30        40        50        60  
UCUUUGCCAAGAGACUG--|   A                     A  C    AUGUUUCCAU 
                   GAAC GAAUGGAAUUUGAAACGUUUU GC AAAA          \
                   CUUG CUUGCUUUAGACUUUGCAAAG CG UUUU          G
CAAGGCCCGGCUUCAACCU^   C                     A  U    UGUGGAAAUG 
   120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-722-v2_5p*

mirBase accessionNone
Sequence
0- UUUGAAACGUUUUAGCCAAAA -21
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Mature sequence

Loc-Mir-722-v2_3p

mirBase accessionNone
Sequence
44- UUUGCAGAAACGUUUCAGAUU -65
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