MirGeneDB 2.1
MirGeneDB ID

Lpo-Mir-279-P12

Family name MIR-279 (all species)
Seed GACUAGA
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-279-P9  Lpo-Mir-279-P10  Lpo-Mir-279-P11  Lpo-Mir-279-P13 
Orthologues Bpl-Mir-279  Cgi-Mir-279  Cte-Mir-279-o12  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013671891.1: 16421-16479 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGGAGUUUUGACAUUAUGUCUUUGACUGUAGAUGGUUGUGAGUCUGGUUCAUGUGUUCCCGUUACCAUGACUAGAUCCACACUCAUCCAUGGGAAGAGACAUUUCUUCAGUUGACACUU
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Structure
        10          20        30        40        50         
GGGAGUUUUGACAUUAU--|     GA    A    GU    AG      U    UGUUC 
                   GUCUUU  CUGU GAUG  UGUG  UCUGGU CAUG     C
                   CAGAGA  GGUA CUAC  ACAC  AGAUCA GUAC     C
UUCACAGUUGACUUCUUUA^     AG    C    UC    CU      -    CAUUG 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-279-P12_5p* (predicted)
mirBase accessionNone
Sequence 
0- GAUGGUUGUGAGUCUGGUUCAUG -23
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Mature sequence

Lpo-Mir-279-P12_3p
mirBase accessionNone
Sequence 
37- UGACUAGAUCCACACUCAUCCA -59
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