MirGeneDB 2.1

MirGeneDB ID

Lpo-Novel-3

Family name LPO-NOVEL-3 (all species)
Seed AUGAGAA
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) L. polyphemus
Node of Origin (family) L. polyphemus
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013666248.1: 468097-468155 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGUUAGCUGUAGCUGCUGGAAUAGUCUCAUUCAUAGCAGCCUCUCAUGUGAAUUUUAAAGGAUUACAUGAGAAGCUGCUCUGAAUGAGACUGUGUGAGAUCAACAUAUUCAUCUGGU
Get precursor sequence
Structure
        10          20        30        40        50         
CUUGUUAGCUGUAGCUG--| GGA             U      C         AAUUUU 
                   CU   AUAGUCUCAUUCA AGCAGC UCUCAUGUG      \
                   GA   UGUCAGAGUAAGU UCGUCG AGAGUACAU      A
UGGUCUACUUAUACAACUA^ GUG             C      A         UAGGAA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Novel-3_5p*

mirBase accessionNone
Sequence
0- AUUCAUAGCAGCCUCUCAUGUG -22
Get sequence
Mature sequence

Lpo-Novel-3_3p

mirBase accessionNone
Sequence
37- CAUGAGAAGCUGCUCUGAAUGA -59
Get sequence