| MirGeneDB ID | Lpo-Novel-5 |
|---|
| Family name |
LPO-NOVEL-5 (all species) |
|---|
| Seed |
UUUAAUG |
|---|
| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
L. polyphemus
|
|---|
| Node of Origin (family) |
L. polyphemus
|
|---|
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013673699.1: 7082-7141 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUGAAAACAAACUACAAGUUGGUUUGAAAAUUUUAAUGGACUGUAAGUGCCUGUUGAAAGAAAAGGAGACAGUUGCAGUUCAUUAAAAUUCUCAAACCUACUACGUCUACCCUGCCUGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGAAAACAAACUACAA--| U A G C GUUGAA
GU GGUUUGA AAUUUUAAUGGACUGUAA UG CU A
CA CCAAACU UUAAAAUUACUUGACGUU AC GA G
AAGUCCGUCCCAUCUGCAU^ U C G A GGAAAA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Lpo-Novel-5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUUUAAUGGACUGUAAGUGCCU -22
Get sequence
|
|---|
| Star sequence |
Lpo-Novel-5_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- ACAGUUGCAGUUCAUUAAAAUU -60
Get sequence
|
|---|
