MirGeneDB 2.1

MirGeneDB ID

Lpo-Novel-5

Family name LPO-NOVEL-5 (all species)
Seed UUUAAUG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) L. polyphemus
Node of Origin (family) L. polyphemus
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013673699.1: 7082-7141 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGAAAACAAACUACAAGUUGGUUUGAAAAUUUUAAUGGACUGUAAGUGCCUGUUGAAAGAAAAGGAGACAGUUGCAGUUCAUUAAAAUUCUCAAACCUACUACGUCUACCCUGCCUGAA
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Structure
        10          20        30        40        50         
AUGAAAACAAACUACAA--| U       A                  G  C  GUUGAA 
                   GU GGUUUGA AAUUUUAAUGGACUGUAA UG CU      A
                   CA CCAAACU UUAAAAUUACUUGACGUU AC GA      G
AAGUCCGUCCCAUCUGCAU^ U       C                  G  A  GGAAAA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Ma Ma To
Mature sequence

Lpo-Novel-5_5p

mirBase accessionNone
Sequence
0- UUUUAAUGGACUGUAAGUGCCU -22
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Star sequence

Lpo-Novel-5_3p*

mirBase accessionNone
Sequence
38- ACAGUUGCAGUUCAUUAAAAUU -60
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