MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-221-P2a1

Family name MIR-221 (all species)
Seed GCUACAU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mal-Mir-221-P2a2 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cja-Mir-221-P2a  Cli-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a1  Eca-Mir-221-P2a  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gja-Mir-221-P2a  Gmo-Mir-221-P2a1  Hsa-Mir-221-P2a  Laf-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmr-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Neu-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pab-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Tni-Mir-221-P2a1  Xtr-Mir-221-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV885120.1: 274060-274123 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAGAUGAGGUACCUUUGCUUUGUCCUGAACCUGGCAUACAAUGUAGAUUUCUGUGUGGUUCAAUUCUACAGCUACAUUGUCUGCUGGGUUUCAGGCUAGCAAUAUAAGCAGCUGUUAUGCAA
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Structure
        10            20        30         40        50        60   
AAGAGAUGAGGUACCUU----|   UU U      -  UG   U         AUUU    GUGGUU 
                     UGCU  G CCUGAA CC  GCA ACAAUGUAG    CUGU      \
                     ACGA  C GGACUU GG  CGU UGUUACAUC    GACA      C
AACGUAUUGUCGACGAAUAUA^   U- -      U  GU   C         ----    UCUUAA 
  120       110       100          90        80            70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-221-P2a1_5p*
mirBase accessionNone
Sequence 
0- ACCUGGCAUACAAUGUAGAUUUCUGU -26
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Mature sequence

Mal-Mir-221-P2a1_3p
mirBase accessionNone
Sequence 
41- AGCUACAUUGUCUGCUGGGUUUC -64
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