| MirGeneDB ID | Mal-Mir-24-P4a |
|---|
| Family name |
MIR-24 (all species) |
|---|
| Seed |
UGCCUAC |
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| Species |
Asian swamp eel (Monopterus albus) |
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| MiRBase ID |
|
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| Paralogues |
Mal-Mir-24-P4b
|
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| Orthologues |
Dre-Mir-24-P4a
Gmo-Mir-24-P4a
Lch-Mir-24-P4
Loc-Mir-24-P4
Sto-Mir-24-P4
Tni-Mir-24-P4a
|
|---|
| Node of Origin (locus) |
Clupeocephala
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCA_001952655.1_M_albus_1.0_genomic) |
KV884817.1: 549216-549275 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCCCAAAUGAUGUCUGGGCUAUGCCCUCCCGUGCCUACUGAACUGGUAUCAGUGUUUGACCUUAAAACUGGCUCAGUUCAUCAGGAACAGGAGUGGAGCCUUCUUACUAGCAAGAACCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCCCAAAUGAUGUCUGG----| AUG - C G AC UA GUUUGA
GCU CC CUCC GU CCU UGAACUGG UCAGU \
CGA GG GAGG CA GGA ACUUGACU GGUCA C
UACCAAGAACGAUCAUUCUUC^ --- U A A CU C- AAAUUC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut +1 on the 5p arm. |
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Mal-Mir-24-P4a_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GUGCCUACUGAACUGGUAUCAGU -23
Get sequence
|
|---|
| Star sequence |
Mal-Mir-24-P4a_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- UGGCUCAGUUCAUCAGGAACAG -60
Get sequence
|
|---|
