Mir-26-P1b

MirGeneDB ID

Mal-Mir-26-P1b

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-26-P1a Mal-Mir-26-P2a Mal-Mir-26-P2b Mal-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cja-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1b Eca-Mir-26-P1 Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1b Hsa-Mir-26-P1 Laf-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmr-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Neu-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pab-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1b Xtr-Mir-26-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884754.1: 1888086-1888145 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGACCCUGCAGAGAAUGGCUGUGAUUCAGUUCAAGUAAUCCAGGAUAGGCUGUGUGUAUUCUGUUGGCCUAUUCAUGAUUACUUGCACUGGGUGGCAGCUGCUGGACUGGUAAGAGUAU

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Structure

        10          20        30        40        50         
AAGACCCUGCAGAGAAU--|     G       U         CA         GUGUGU 
                   GGCUGU AUUCAGU CAAGUAAUC  GGAUAGGCU      A
                   UCGACG UGGGUCA GUUCAUUAG  CUUAUCCGG      U
UAUGAGAAUGGUCAGGUCG^     G       C         UA         UUGUCU 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-26-P1b_5p

mirBase accession

None

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

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Star sequence

Mal-Mir-26-P1b_3p*

mirBase accession

None

Sequence

38- CCUAUUCAUGAUUACUUGCACU -60

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