MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-12316-v1

Family name MIR-12316 (all species)
Seed UGAAAGG
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID
Paralogues Mdo-Mir-12316-v2 
Orthologues
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)
1: 727221039-727221103 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCGCUUGCUCAGGUGUUGGCUGGACCAGGUGGCCUCUGAGGUUCCUUCCAACUCCGACAUUCUGUAAUUGGUUUGAAAGGGAUCAGAGGUCAUUUGGUCCAUCCCUCUGCCUCCAAAGCCGACU
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Structure
        10          20        30        40         50        60  
CCCGCUUGCUCAGGUGUU--| C                   GG      - C    CCGACAU 
                    GG UGGACCAGGUGGCCUCUGA  UUCCUU C AACU       U
                    CC ACCUGGUUUACUGGAGACU  AGGGAA G UUGG       C
UCAGCCGAAACCUCCGUCUC^ U                   --      A U    UUAAUGU 
   120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-12316-v1_5p*

mirBase accessionNone
Sequence
0- UGGCCUCUGAGGUUCCUUCCAACU -24
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Mature sequence

Mdo-Mir-12316-v1_3p

mirBase accessionNone
Sequence
43- UUGAAAGGGAUCAGAGGUCAUU -65
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