Mir-506-P6c1

MirGeneDB ID

Mml-Mir-506-P6c1

Family name

MIR-506 (all species)

Seed

UCACAGG

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-513a-1

Paralogues

Mml-Mir-506-P1 Mml-Mir-506-P2 Mml-Mir-506-P3 Mml-Mir-506-P4d Mml-Mir-506-P4e Mml-Mir-506-P4f Mml-Mir-506-P5 Mml-Mir-506-P6a Mml-Mir-506-P6b1 Mml-Mir-506-P6b2 Mml-Mir-506-P6c2 Mml-Mir-506-P7a Mml-Mir-506-P8 Mml-Mir-506-P9 Mml-Mir-506-P10 Mml-Mir-506-P11 Mml-Mir-506-P12 Mml-Mir-506-P13 Mml-Mir-506-P29

Orthologues

Bta-Mir-506-P6 Cpo-Mir-506-o6 Cpo-Mir-506-P6 Hsa-Mir-506-P6c Ocu-Mir-506-P6 Rno-Mir-506-P6

Node of Origin (locus)

M. mulatta

Node of Origin (family)

Eutheria

Genome context
(rheMac8_trace)

chrX: 140924370-140924427 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P6c1)

Mir-506-P6b2 chrX: 140902118-140902175 [-] UCSC Ensembl
Mir-506-P6b1 chrX: 140909251-140909308 [-] UCSC Ensembl
Mir-506-P6c1 chrX: 140924370-140924427 [-] UCSC Ensembl
Mir-506-P6a chrX: 140933343-140933400 [-] UCSC Ensembl
Mir-506-P1 chrX: 140946831-140946887 [-] UCSC Ensembl
Mir-506-P2 chrX: 140947157-140947214 [-] UCSC Ensembl
Mir-506-P3 chrX: 140953023-140953080 [-] UCSC Ensembl
Mir-506-P8 chrX: 140957066-140957123 [-] UCSC Ensembl
Mir-506-P4e chrX: 140966427-140966484 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUUCAGCCAUUCAGUGGUGUACAGUGCCUUUCACAGGGAGGUGUCAUUUAUGUGAACUAAACUAUAAAUGUCACCUUUCUGCGAAGGGUAAUGUACAUCAUGCACUGCAUAUGUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
CAUUCAGCCAUUCAGUG--|      G        A   GG     U        UGAA 
                   GUGUACA UGCCUUUC CAG  AGGUG CAUUUAUG    C
                   UACAUGU AUGGGAAG GUC  UCCAC GUAAAUAU    U
UGGUGUAUACGUCACGUAC^      A        C   UU     U        CAAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-506-P6c1_5p

mirBase accession

MIMAT0005768

Sequence

0- UUCACAGGGAGGUGUCAUUUAUG -23

Get sequence

Proposed targets

TargetScanVert: mml-miR-513a

Star sequence

Mml-Mir-506-P6c1_3p*

mirBase accession

None

Sequence

35- UAAAUGUCACCUUUCUGCGAAGG -58

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