Mir-147-v2

MirGeneDB ID

Mmu-Mir-147-v2

Family name

MIR-147 (all species)

Seed

GUGUGCG

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-147

Paralogues

Mmu-Mir-147-v1

Orthologues

Aca-Mir-147-v2 Ami-Mir-147-v2 Bta-Mir-147 Cli-Mir-147 Cmi-Mir-147 Cpi-Mir-147-v2 Cpo-Mir-147-v2 Dno-Mir-147-v2 Gga-Mir-147 Hsa-Mir-147-v2 Lch-Mir-147 Loc-Mir-147-v2 Mal-Mir-147-v2 Mdo-Mir-147 Mml-Mir-147 Oan-Mir-147 Ocu-Mir-147 Pbv-Mir-147-v2 Pma-Mir-147 Rno-Mir-147-v2 Spt-Mir-147 Tgu-Mir-147 Tni-Mir-147

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr2: 122640814-122640870 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-147-v2)

Mir-147-v1 chr2: 122640813-122640871 [+] UCSC Ensembl
Mir-147-v2 chr2: 122640814-122640870 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUCUUCCAAAGAACACUCUAUGAAUCUAGUGGAAACAUUUCUGCACAAACUAGAUGUUGAUGCCAGUGUGCGGAAAUGCUUCUGCUACAUUUGUAGGGUUUGCCUGCAUUCUUUGG

Get precursor sequence

Structure

        10          20        30        40        50        
UCUCUUCCAAAGAACAC--|   UG   C   UG   A            AACUAGAUG 
                   UCUA  AAU UAG  GAA CAUUUCUGCACA         \
                   GGAU  UUA AUC  CUU GUAAAGGCGUGU         U
GGUUUCUUACGUCCGUUUG^   GU   C   GU   C            GACCGUAGU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt	Wt

Star sequence

Mmu-Mir-147-v2_5p*

mirBase accession

MIMAT0017269

Sequence

0- UGGAAACAUUUCUGCACAAACU -22

Get sequence

Proposed targets

TargetScanVert: mmu-miR-147-5p
miRDB: MIMAT0017269

Mature sequence

Mmu-Mir-147-v2_3p

mirBase accession

MIMAT0004857

Sequence

35- AGUGUGCGGAAAUGCUUCUGCU -57

Get sequence

Proposed targets

microrna.org: MIMAT0004857
TargetScanVert: mmu-miR-147-3p
miRDB: MIMAT0004857