Mir-142-P2

MirGeneDB ID

Mun-Mir-142-P2

Family name

MIR-142 (all species)

Seed

AUAAAGU

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-142-P2-v1 Aca-Mir-142-P2-v2 Aca-Mir-142-P2-v3 Aca-Mir-142-P2-v4 Ami-Mir-142-P2-v1 Ami-Mir-142-P2-v2 Ami-Mir-142-P2-v3 Ami-Mir-142-P2-v4 Cpi-Mir-142-P2-v1 Cpi-Mir-142-P2-v2 Cpi-Mir-142-P2-v3 Cpi-Mir-142-P2-v4 Dre-Mir-142-P2-v1 Dre-Mir-142-P2-v2 Dre-Mir-142-P2-v3 Gja-Mir-142-P2-v1 Gja-Mir-142-P2-v2 Gja-Mir-142-P2-v3 Gja-Mir-142-P2-v4 Gmo-Mir-142-P2-v1 Gmo-Mir-142-P2-v2 Gmo-Mir-142-P2-v3 Gmo-Mir-142-P2-v4 Lch-Mir-142-P2 Mal-Mir-142-P2-v1 Mal-Mir-142-P2-v2 Mal-Mir-142-P2-v3 Mal-Mir-142-P2-v4 Pbv-Mir-142-P2-v1 Pbv-Mir-142-P2-v2 Pbv-Mir-142-P2-v3 Pbv-Mir-142-P2-v4 Tni-Mir-142-P2-v1 Tni-Mir-142-P2-v2 Tni-Mir-142-P2-v3 Tni-Mir-142-P2-v4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Mun_miRNA_loci)

142-P2_LR594638.1:123466933-123467074: 42-101 [-]

Precursor
(pre-Mir +30nt flank)

AUGGCUGAUGAGACAUACAGUGGAGUCAUCCAUAAAGUAGAAAGCACUACUAAACCAUUCCAUUCAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCAUCUGAGAGGAUUG

Get precursor sequence

Structure

        10          20        30        40        50         
AUGGCUGAUGAGACAUA--|    GAG               A         UAAACCAU 
                   CAGUG   UCAUCCAUAAAGUAG AAGCACUAC        U
                   GUCAU   AGUAGGUAUUUCAUC UUUGUGAUG        C
GUUAGGAGAGUCUACGGGU^    GUG               C         UGACUUAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Mun-Mir-142-P2_5p (predicted)

mirBase accession

None

Sequence

0- CAUAAAGUAGAAAGCACUACUA -22

Get sequence

Star sequence

Mun-Mir-142-P2_3p*

mirBase accession

None

Sequence

38- GUAGUGUUUCCUACUUUAUGGA -60

Get sequence