MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-1338

Family name MIR-1338 (all species)
Seed AGGGAGC
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-1338
Paralogues
Orthologues
Node of Origin (locus) O. anatinus
Node of Origin (family) O. anatinus
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041732.1: 39211982-39212047 [-]
Precursor
(pre-Mir +30nt flank)
UGGUGGGCCUCUUUCUAGUUGUUGGGGAUGCAGGGAGCAGACCAGUCCAGUAGAGUUGCCUUCAAUUAAGUUCCCACUGGGCUUGUGCUCACUGUCUCCCUGCUUCUGUAGCCUGUGGGCCACACA
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Structure
        10        20        30         40             50        60   
UGGUGGGCCUCUUUCUAGUUGUUGG   U        -   -----| C        AGAGUUGCCUU 
                         GGA GCAGGGAG CAG     AC AGUCCAGU           C
                         UCU CGUCCCUC GUC     UG UCGGGUCA           A
ACACACCGGGUGUCCGAUG------   U        U   ACUCG^ U        CCCUUGAAUUA 
    120       110             100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-1338_5p

mirBase accessionMIMAT0006839
Sequence
0- CAGGGAGCAGACCAGUCCAGUAGA -24
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Star sequence

Oan-Mir-1338_3p*

mirBase accessionMIMAT0006840
Sequence
44- CACUGGGCUUGUGCUCACUGUC -66
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