MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-1380

Family name MIR-1380 (all species)
Seed UUUAGUC
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-1380
Paralogues
Orthologues
Node of Origin (locus) O. anatinus
Node of Origin (family) O. anatinus
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041731.1: 68255444-68255502 [+]
Precursor
(pre-Mir +30nt flank)
UGGCUUUGAUGCAGUGAUCACCACCUUGUCACAUCCCUUCUGUCUGCACCUGUGGGGAAAAUCUUAAGGUUUAGUCAGGUGGGGUGUGACAAGGAAGUCGAAAGAAUCAUUUUCAAAAC
Get precursor sequence
Structure
        10          20        30        40        50         
UGGCUUUGAUGCAGUGA-  -| CA              U    U   C    GUGGGGA 
                  UC AC  CCUUGUCACAUCCC UCUG CUG ACCU       \
                  AG UG  GGAACAGUGUGGGG GGAC GAU UGGA       A
CAAAACUUUUACUAAGAA  C^ AA              U    U   U    AUUCUAA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Oan-Mir-1380_5p*

mirBase accessionMIMAT0007116
Sequence
0- ACAUCCCUUCUGUCUGCACCU -21
Get sequence
Mature sequence

Oan-Mir-1380_3p

mirBase accessionMIMAT0007117
Sequence
38- GUUUAGUCAGGUGGGGUGUGA -59
Get sequence