MirGeneDB 3.0
MirGeneDB ID

Oan-Mir-1388-v1

Family name MIR-1388 (all species)
Seed UCUCAGG
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-1388
Paralogues Oan-Mir-1388-v2 
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(mOrnAna1.p.v1_plustraces)		 NC_041735.1: 20334932-20334992 [+]
Clustered miRNAs
(< 50kb from Mir-1388-v1)		 Mir-1388-v1 NC_041735.1: 20334932-20334992 [+]
Mir-1388-v2 NC_041735.1: 20334932-20334992 [+]
Precursor
(pre-Mir +30nt flank)
GUGGGUGCCUGUUCAGUGGGGGGCGUGUCUAGGACUGUCUAACCUGAGAAUGGUGAUGUGUGAGGGUCAAUCUCAGGUUCGUCAGCCCAUGAAACGCCUUCUCCAGAUCCAACGCAGGGGC
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Structure
        10          20        30        40        50          
GUGGGUGCCUGUUCAGU--|        G  UA  A   UCU         A  GUGAUGU 
                   GGGGGGCGU UC  GG CUG   AACCUGAGA UG       \
                   UCUUCCGCA AG  CC GAC   UUGGACUCU AC       G
CGGGGACGCAACCUAGACC^        A  UA  C   UGC         A  UGGGAGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Br Ce He Ki Te
Star sequence

Oan-Mir-1388-v1_5p*
mirBase accessionMIMAT0007168
Sequence 
0- AGGACUGUCUAACCUGAGAAUG -22
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Mature sequence

Oan-Mir-1388-v1_3p
mirBase accessionMIMAT0007169
Sequence 
39- AUCUCAGGUUCGUCAGCCCAUG -61
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