| MirGeneDB ID | Obi-Mir-12520 |
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| Family name |
MIR-12520 (all species) |
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| Seed |
CCUUGAU |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Esc-Mir-12520
Ovu-Mir-12520
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(PRJNA270931_OBI) |
KQ417481: 1228842-1228897 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGUGUUGCUUUGAGGAAGGUUCGGUUCGAUCCCUUGAUUUCUCUGCCACUCCGUGAUUAGCUGAAGUGUCUGAGGAAUCAUGAGAGCGAACCAAUCACAAGUCUUCAGCAGUCACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUGUUGCUUUGAGGAA---| C A CCU UGC C GUGA
GGUU GGUUCG UC UGAUUUCUC CACU C U
CUAA CCAAGC AG ACUAAGGAG GUGA G U
ACACUGACGACUUCUGAACA^ - G AGU UCU A UCGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Obi-Mir-12520_5p |
| mirBase accession | None |
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| Sequence |
0- CCCUUGAUUUCUCUGCCACUCC -22
Get sequence
|
|---|
| Star sequence |
Obi-Mir-12520_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- AGUGUCUGAGGAAUCAUGAGAG -56
Get sequence
|
|---|
