| MirGeneDB ID | Obi-Mir-12535-v1 |
|---|
| Family name |
MIR-12535 (all species) |
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| Seed |
UCAUCAU |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
Obi-Mir-12535-v2
|
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| Orthologues |
Esc-Mir-12535-v1
Ovu-Mir-12535-v1
|
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(PRJNA270931_OBI) |
KQ416924: 379553-379613 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUGGAUGUUGAUCCAACAGAUAGAGCCAGUACAGCCUUGCAGAUGGUCAAAUACGUUUUAGGAAGACAUUUCAUCAUUCACAAGGCUGCACUGUCGCUGUCUACAUCAACAUUAGAGCCUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGGAUGUUGAUCCAAC--| AGC A CA C ACGUUUU
AGAUAG CAGU CAGCCUUG GAUGGU AAAU \
UCUGUC GUCA GUCGGAAC UUACUA UUUA A
UUCCGAGAUUACAACUACA^ GCU C AC C CAGAAGG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Obi-Mir-12535-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACAGCCUUGCAGAUGGUCAAAU -22
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-12535-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UUCAUCAUUCACAAGGCUGCAC -61
Get sequence
|
|---|
