| MirGeneDB ID | Obi-Mir-12538 |
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| Family name |
MIR-12538 (all species) |
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| Seed |
UCCGGAG |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Esc-Mir-12538
Ovu-Mir-12538
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(PRJNA270931_OBI) |
KQ422292: 18345-18401 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAUACAAACCUUCGAUGCGAUGUGAGUGGUUCCGGAGUUUCACACCCAUCAGUCACAACAGUCGAUGGGUGUGAACCUCUAGAAAAUCUCACAUUGGUCUUUCACCAACCAACAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGAUACAAACCUUCGAUG--| UGG CG U AGUCAC
CGAUGUGAG UUC GAG UUCACACCCAUC \
GUUACACUC AAG CUC AAGUGUGGGUAG A
UAACAACCAACCACUUUCUG^ UAA AU C CUGACA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Obi-Mir-12538_5p |
| mirBase accession | None |
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| Sequence |
0- UUCCGGAGUUUCACACCCAUCA -22
Get sequence
|
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| Star sequence |
Obi-Mir-12538_3p* |
| mirBase accession | None |
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| Sequence |
35- AUGGGUGUGAACCUCUAGAAAA -57
Get sequence
|
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