| MirGeneDB ID | Obi-Mir-12553 |
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| Family name |
MIR-12553 (all species) |
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| Seed |
GCCCUAU |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Ovu-Mir-12553
|
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| Node of Origin (locus) |
Octopus
|
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| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ420857: 10180-10240 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCUUUUAGGAAUCUAUUUUAGACACUGCUCUGCCCUAUAAAUGGUCCCCGUGUUAAUAUAUAUAUAACGGGAAUCACUUAUAUAGGGUGUAGGAAUGUCUUUAUACACAACUUCUUGAAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCUUUUAGGAAUCUAUUUU-- ---| UCU AA-- C GUUAAUA
AGACA CUGC GCCCUAUA UGGU CCCGU \
UCUGU GAUG UGGGAUAU ACUA GGGCA U
UAAAGUUCUUCAACACAUAUU AAG^ --- AUUC A AUAUAUA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Obi-Mir-12553_5p |
| mirBase accession | None |
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| Sequence |
0- UGCCCUAUAAAUGGUCCCCGU -21
Get sequence
|
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| Star sequence |
Obi-Mir-12553_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- GGGAAUCACUUAUAUAGGGUGUA -61
Get sequence
|
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