MirGeneDB 2.1

MirGeneDB ID

Obi-Mir-2-o22c

Family name MIR-2 (all species)
Seed AUCACAG
Species California two-spot octopus (Octopus bimaculoides)
MiRBase ID
Paralogues Obi-Mir-2-o20-v1  Obi-Mir-2-o20-v2  Obi-Mir-2-o21  Obi-Mir-2-o22a  Obi-Mir-2-o22b  Obi-Mir-2-o22d  Obi-Mir-2-o22e  Obi-Mir-2-o23  Obi-Mir-2-o24 
Orthologues Ovu-Mir-2-o22c 
Node of Origin (locus) Octopus
Node of Origin (family) Protostomia
Genome context
(PRJNA270931_OBI)
KQ419829: 50497-50556 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUGUGUGUAUCUAUUGGCCAUGUUGCAUCUCAUCAAAUAACUGGGAUAUGCGGUUAUAAUGACGUAUCACAGCUAGCUUUGAUGAGCUUCAACUUGGUUGUUCUCAGCAACCUGGUUC
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Structure
        10          20        30          40        50        
CUCUGUGUGUAUCUAUU--     U    CAU         --| A   G      CGGUU 
                   GGCCA GUUG   CUCAUCAAA  UA CUG GAUAUG     A
                   UUGGU CAAC   GAGUAGUUU  AU GAC CUAUGC     U
CUUGGUCCAACGACUCUUG     U    UUC         CG^ C   A      AGUAA 
.       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Obi-Mir-2-o22c_5p*

mirBase accessionNone
Sequence
0- CUCAUCAAAUAACUGGGAUAUG -22
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Mature sequence

Obi-Mir-2-o22c_3p

mirBase accessionNone
Sequence
36- UAUCACAGCUAGCUUUGAUGAGCU -60
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