MirGeneDB ID | Obi-Mir-2-o22e |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
Obi-Mir-2-o20-v1
Obi-Mir-2-o20-v2
Obi-Mir-2-o21
Obi-Mir-2-o22a
Obi-Mir-2-o22b
Obi-Mir-2-o22c
Obi-Mir-2-o22d
Obi-Mir-2-o23
Obi-Mir-2-o24
|
Orthologues |
Ovu-Mir-2-o22e
|
Node of Origin (locus) |
Octopus
|
Node of Origin (family) |
Protostomia
|
Genome context (PRJNA270931_OBI) |
KQ419829: 50094-50153 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGUGUUUUGAUGUUCCGACUCUAUUGUAACUCAUUAAAGAGCUGGGAUAUGCUGUCUUUCUGACAUAUCACAGCUAGCUUUGAUGAGCUACACUUGGGUUAUUUCACCUCCAAUUUACU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGUGUUUUGAUGUUCC-- UAU A --| G CUGUC
GACUC UGUA CUCAUUAAAG AGCUG GAUAUG U
UUGGG ACAU GAGUAGUUUC UCGAC CUAUAC U
UCAUUUAACCUCCACUUUA UUC C GA^ A AGUCU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. There is a second Drosha cut +1 on the 5p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Obi-Mir-2-o22e_5p* |
mirBase accession | None |
Sequence |
0- CUCAUUAAAGAGCUGGGAUAUG -22
Get sequence
|
Mature sequence |
Obi-Mir-2-o22e_3p |
mirBase accession | None |
Sequence |
36- UAUCACAGCUAGCUUUGAUGAGCU -60
Get sequence
|