| MirGeneDB ID | Obi-Novel-21 |
|---|
| Family name |
COL-NOVEL-21 (all species) |
|---|
| Seed |
AUUAGAA |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Esc-Novel-21
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ423850: 36544-36600 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UACUUUGGUGUGUGUGUGUGAAUACCCGAAUAUUAGAAAGUCGUAAGUGUCAAUUAUUUAGUUUGACACCUGCGAGUUUCUAACAAACGGUUGUUCAUUUAUUCAACAACAGAAGAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UACUUUGGUGUGUGUGU--| C AAUA G A AUUAU
GUGAAUA CCG UUAGAAA UCGUA GUGUCA \
UACUUGU GGC AAUCUUU AGCGU CACAGU U
UAGAAGACAACAACUUAUU^ U AAAC G C UUGAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Obi-Novel-21_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAUUAGAAAGUCGUAAGUGUCA -22
Get sequence
|
|---|
| Star sequence |
Obi-Novel-21_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- ACACCUGCGAGUUUCUAACAAA -57
Get sequence
|
|---|
