| MirGeneDB ID | Obi-Novel-54 |
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| Family name |
COL-NOVEL-54 (all species) |
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| Seed |
GCUAGCA |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Novel-54
Ovu-Novel-54
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(PRJNA270931_OBI) |
KQ415990: 923685-923741 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGUUAUUGGCACUCCAGAGGCGCGCUGGUCUGCUAGCAAUCUAUCGUGGUUAUGUCAUGUCCGCCACCACGCUGGUAUGCUAACAGUCUAUCGUGGCUACUACUCAGCCUGUGUACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUUAUUGGCACUCCAG--| G C U C AU U UAUGUCA
AG CGCG UGG CUG UAGCA CUA CGUGGU \
UC GUGC AUC GAC AUCGU GGU GCACCA U
UCAUGUGUCCGACUCAUCA^ G U U A AU C CCGCCUG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut -2 on the 5p arm but without corresponding star reads. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Mature sequence |
Obi-Novel-54_5p |
| mirBase accession | None |
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| Sequence |
0- UGCUAGCAAUCUAUCGUGGUUA -22
Get sequence
|
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| Star sequence |
Obi-Novel-54_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- ACCACGCUGGUAUGCUAACAGU -57
Get sequence
|
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