| MirGeneDB ID | Obi-Novel-57 |
|---|
| Family name |
OCT-NOVEL-57 (all species) |
|---|
| Seed |
AAACUCA |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
|---|
| Orthologues |
Ovu-Novel-57
|
|---|
| Node of Origin (locus) |
Octopus
|
|---|
| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ419924: 283995-284054 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAAUGAUGGAGAACUUUUUUUUUGGUUAGUAGUUUUCUUCUCUCAGUUUAUCUGUAAGAUUUAUACCACAAACUCAGAGAAGAGAUCUGCCAACUAAAAAGCAAAGCAACAUGGUUCUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAAUGAUGGAGAACUUU--| A U C AUCUGUAAG
UUUUUUGGUU GUAG UUUCUUCUCU AGUUU A
GAAAAAUCAA CGUC AGAGAAGAGA UCAAA U
CCUCUUGGUACAACGAAAC^ C U C CACCAUAUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Obi-Novel-57_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUUUUCUUCUCUCAGUUUAUC -22
Get sequence
|
|---|
| Mature sequence |
Obi-Novel-57_3p |
| mirBase accession | None |
|---|
| Sequence |
38- CAAACUCAGAGAAGAGAUCUGC -60
Get sequence
|
|---|
