MirGeneDB ID | Ocu-Mir-154-P22 |
Family name |
MIR-154 (all species) |
Seed |
AACAUUC |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
|
Paralogues |
Ocu-Mir-154-P1
Ocu-Mir-154-P2-v1
Ocu-Mir-154-P2-v2
Ocu-Mir-154-P3a-v1
Ocu-Mir-154-P3a-v2
Ocu-Mir-154-P4-o1
Ocu-Mir-154-P5
Ocu-Mir-154-P6
Ocu-Mir-154-P7
Ocu-Mir-154-P9
Ocu-Mir-154-P10
Ocu-Mir-154-P12
Ocu-Mir-154-P13
Ocu-Mir-154-P15
Ocu-Mir-154-P16
Ocu-Mir-154-P17
Ocu-Mir-154-P19
Ocu-Mir-154-P20-v1
Ocu-Mir-154-P20-v2
Ocu-Mir-154-P21
Ocu-Mir-154-P23
Ocu-Mir-154-P24
Ocu-Mir-154-P25
Ocu-Mir-154-P26
Ocu-Mir-154-P27
Ocu-Mir-154-P30
Ocu-Mir-154-P36
|
Orthologues |
Bta-Mir-154-P22
Cfa-Mir-154-P22
Cpo-Mir-154-P22
Dno-Mir-154-P22
Ete-Mir-154-P22
Hsa-Mir-154-P22
Mml-Mir-154-P22
Mmu-Mir-154-P22
Rno-Mir-154-P22
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
2043804821: 509-567 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACGGAUGGCGCUGACGUGCGGUGCUUAAUGAGAAGUCGCCCGUGUUUUUUUCGCUGUAUUUGUGACGAAACAUUCGCGGUGCACUUCUUUUUCAGUAUCCUACUCUGCCUCGGCGACGU
Get precursor sequence
|
Structure | 10 20 30 40 50
ACGGAUGGCGCUGACGUGC- U U - - --| UUUCGCUG
GGUGCU AA GAGAAGU CGCC CG UGUUUU U
CUAUGA UU UUCUUCA GUGG GC ACAAAG A
UGCAGCGGCUCCGUCUCAUC C U C C UU^ CAGUGUUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archive. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ocu-Mir-154-P22_5p* |
mirBase accession | None |
Sequence |
0- AGAAGUCGCCCGUGUUUUUUU -21
Get sequence
|
Mature sequence |
Ocu-Mir-154-P22_3p |
mirBase accession | None |
Sequence |
37- AAACAUUCGCGGUGCACUUCUU -59
Get sequence
|