MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-330-v2

Family name MIR-330 (all species)
Seed CUCUGGG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues Ocu-Mir-330-v1 
Orthologues Bta-Mir-330-v2  Cfa-Mir-330  Cja-Mir-330-v2  Cpo-Mir-330-v2  Dno-Mir-330-v2  Eca-Mir-330-v2  Ete-Mir-330-v2  Hsa-Mir-330-v2  Laf-Mir-330  Mml-Mir-330-v2  Mmr-Mir-330-v2  Mmu-Mir-330-v2  Pab-Mir-330-v2  Rno-Mir-330-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 2060960366: 224-287 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGCUGUGUGAUCUCUGGCGACCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCACGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUCCGCUGCUUAUUCGGCCCCCCAG
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Structure
        10         20         30          40         50        60 
AGUGCUGUGUGAUCUCU-    ACCA-           --    -|   U   AG    UGCACG 
                  GGCG     CUGCCUCUCUG  GGCC UGUG CUU  GCUC      \
                  UCGC     GACGGAGAGAC  CCGG ACAC GAA  CGAG      A
GACCCCCCGGCUUAUUCG    CUCGC           GU    C^   -   A-    CCAACU 
  120       110       100        90        80          70
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-330-v2_5p
mirBase accessionNone
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGCUC -24
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Star sequence

Ocu-Mir-330-v2_3p*
mirBase accessionNone
Sequence 
39- GCAAAGCACACGGCCUGCAGAGAGG -64
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