MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-506-P1

Family name MIR-506 (all species)
Seed AUGGUAC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-506
Paralogues Ocu-Mir-506-P2  Ocu-Mir-506-P3  Ocu-Mir-506-P5  Ocu-Mir-506-P6  Ocu-Mir-506-P7d  Ocu-Mir-506-P7e 
Orthologues Bta-Mir-506-P1  Cfa-Mir-506-P1  Cpo-Mir-506-o1  Cpo-Mir-506-P1  Dno-Mir-506-P1  Hsa-Mir-506-P1  Mml-Mir-506-P1  Mmu-Mir-506-P1  Rno-Mir-506-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrUn0002: 10694554-10694611 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P1)
Mir-506-P6 chrUn0002: 10678464-10678522 [-] UCSC Ensembl
Mir-506-P7e chrUn0002: 10687771-10687828 [-] UCSC Ensembl
Mir-506-P1 chrUn0002: 10694554-10694611 [-] UCSC Ensembl
Mir-506-P3 chrUn0002: 10705716-10705773 [-] UCSC Ensembl
Mir-506-P2 chrUn0002: 10707176-10707233 [-] UCSC Ensembl
Mir-506-P7d chrUn0002: 10711587-10711644 [-] UCSC Ensembl
Mir-506-P5 chrUn0002: 10723771-10723827 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACACCUUCAGUCAUGCUGUGUACAGUAGCCUACUCAGGAAGGCAUUAUUCAUGUAUUUUGAUGUGUGAAUGGUACACUUCUGAGUAGAGUAAUGUGCAACAUGGACAACAUUCGUAGU
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Structure
        10          20         30        40         50        
ACACCUUCAGUCAUGCUG--|     GUA  -        G   GC-        UGUAUU 
                    UGUACA   GC CUACUCAG AAG   AUUAUUCA      U
                    ACGUGU   UG GAUGAGUC UUC   UGGUAAGU      U
UGAUGCUUACAACAGGUACA^     AA-  A        -   ACA        GUGUAG 
      110       100         90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-506-P1_5p*

mirBase accessionMIMAT0048505
Sequence
0- UACUCAGGAAGGCAUUAUUCA -21
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Mature sequence

Ocu-Mir-506-P1_3p

mirBase accessionMIMAT0048506
Sequence
37- AAUGGUACACUUCUGAGUAGA -58
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