MirGeneDB ID | Ovu-Novel-18 |
Family name |
COL-NOVEL-18 (all species) |
Seed |
AGAUUCG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Esc-Novel-18
Obi-Novel-18
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01006983.1: 197735-197792 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUAGCAGUUAAUCAUAUUCUCCAGUGUCUGUAGAUUCGAGUCCGGGUCGGAGAUGUUAUCACAGUUCUGACAGGACAUCGAACCUGCAAACCUUGGAAGAACAGUCAACAGGGACGUG
Get precursor sequence
|
Structure | 10 20 30 40 50
GUAGCAGUUAAUCAUAU- - U C A -| GG AUGUU
UC UCCAG GU UGUAG UUCGA GUCC GUCGGAG A
AG AGGUU CA ACGUC AAGCU CAGG CAGUCUU U
GUGCAGGGACAACUGACA A C A C A^ A- GACAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
No |
No |
No |
No |
No |
No |
No |
No |
No |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Ovu-Novel-18_5p |
mirBase accession | None |
Sequence |
0- UAGAUUCGAGUCCGGGUCGGAG -22
Get sequence
|
Star sequence |
Ovu-Novel-18_3p* |
mirBase accession | None |
Sequence |
36- CUGACAGGACAUCGAACCUGCA -58
Get sequence
|