MirGeneDB 2.1

MirGeneDB ID

Ovu-Novel-18

Family name COL-NOVEL-18 (all species)
Seed AGAUUCG
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues
Orthologues Esc-Novel-18  Obi-Novel-18 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01006983.1: 197735-197792 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUAGCAGUUAAUCAUAUUCUCCAGUGUCUGUAGAUUCGAGUCCGGGUCGGAGAUGUUAUCACAGUUCUGACAGGACAUCGAACCUGCAAACCUUGGAAGAACAGUCAACAGGGACGUG
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Structure
        10          20        30         40        50        
GUAGCAGUUAAUCAUAU-  -     U  C     A     -|   GG       AUGUU 
                  UC UCCAG GU UGUAG UUCGA GUCC  GUCGGAG     A
                  AG AGGUU CA ACGUC AAGCU CAGG  CAGUCUU     U
GUGCAGGGACAACUGACA  A     C  A     C     A^   A-       GACAC 
      110       100        90        80         70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ne Ne Ne Ne Ne Ne Ne Ne Ne No No No No No No No No No
Mature sequence

Ovu-Novel-18_5p

mirBase accessionNone
Sequence
0- UAGAUUCGAGUCCGGGUCGGAG -22
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Star sequence

Ovu-Novel-18_3p*

mirBase accessionNone
Sequence
36- CUGACAGGACAUCGAACCUGCA -58
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