MirGeneDB ID | Ovu-Novel-39 |
Family name |
COL-NOVEL-39 (all species) |
Seed |
GCCUUGC |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Esc-Novel-39
Obi-Novel-39
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Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01036038.1: 215236-215296 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUGACGGACAUAAAGAAAUGUCUUUCAUCCAGGGCAACUCUGGCUGGGUCAUCGUGAAAUAUUUGCUAUGCCUUGCCUUCUCUUGCCUUGGCUGAGAUUGACAGAUAACGGCAGACAGUAG
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGACGGACAUAAAGAAA -- U CUCU-| U U CGUGAAA
UGUC UUUCA CCAGGGCAA GGC GGG CAU \
ACAG AGAGU GGUUCCGUU CCG UCC GUA U
GAUGACAGACGGCAAUAG UU C CUCUU^ U - UCGUUUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
No |
No |
No |
No |
No |
No |
No |
No |
No |
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Star sequence |
Ovu-Novel-39_5p* |
mirBase accession | None |
Sequence |
0- AGGGCAACUCUGGCUGGGUCAUC -23
Get sequence
|
Mature sequence |
Ovu-Novel-39_3p |
mirBase accession | None |
Sequence |
38- UGCCUUGCCUUCUCUUGCCUUGG -61
Get sequence
|