MirGeneDB ID | Ovu-Novel-52 |
Family name |
COL-NOVEL-52 (all species) |
Seed |
UUUCCCG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Esc-Novel-52
Obi-Novel-52
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Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01066856.1: 1346695-1346757 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AGCAACUGAAGAUUCAUGAUUAUUGUCAUUUUUUCCCGAAGUUGCGAAUCUGCAAUUAGAAUAUUACAGAGAUUUGCCACUUCGUGAGAAUUGUGACGUUAUAUUCCUAGCAGCAAUGUAAAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGCAACUGAAGAUUCAUGAUUAU-- U-| C U GCAAUUAG
UGUCAU UUUUC CGAAGU GCGAAUCU A
GCAGUG AAGAG GCUUCA CGUUUAGA A
CAAAUGUAACGACGAUCCUUAUAUU UU^ U C GACAUUAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
No |
No |
No |
No |
No |
No |
No |
No |
No |
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Mature sequence |
Ovu-Novel-52_5p |
mirBase accession | None |
Sequence |
0- UUUUCCCGAAGUUGCGAAUCUG -22
Get sequence
|
Star sequence |
Ovu-Novel-52_3p* |
mirBase accession | None |
Sequence |
40- GAUUUGCCACUUCGUGAGAAUUG -63
Get sequence
|