MirGeneDB ID | Ovu-Novel-54 |
Family name |
COL-NOVEL-54 (all species) |
Seed |
GCUAGCA |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Esc-Novel-54
Obi-Novel-54
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Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01012669.1: 587069-587125 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AGUUAUUGGCACUCCAGAGGCGCGCUGGUCUGCUAGCAAUCUAUCGUGGUUAUGUCAUGUCCGCCACCACGCUGGUAUGCUAACAGUCUAUCGUGGCUACUACUCAGCCUGUGUACU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUUAUUGGCACUCCAG--| G C U C AU U UAUGUCA
AG CGCG UGG CUG UAGCA CUA CGUGGU \
UC GUGC AUC GAC AUCGU GGU GCACCA U
UCAUGUGUCCGACUCAUCA^ G U U A AU C CCGCCUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -2 on the 5p arm. |
3' NTU |
No
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Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
No |
No |
No |
No |
No |
No |
No |
No |
No |
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Mature sequence |
Ovu-Novel-54_5p |
mirBase accession | None |
Sequence |
0- UGCUAGCAAUCUAUCGUGGUUA -22
Get sequence
|
Star sequence |
Ovu-Novel-54_3p* |
mirBase accession | None |
Sequence |
35- ACCACGCUGGUAUGCUAACAGU -57
Get sequence
|