MirGeneDB ID | Ovu-Novel-65 |
Family name |
OCT-NOVEL-65 (all species) |
Seed |
GUCCUUC |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Obi-Novel-65
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Node of Origin (locus) |
Octopus
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Node of Origin (family) |
Octopus
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01070942.1: 145230-145290 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GCUUCCGGUUAACGGAGAAGGUAUUGUCAUAGUAACAUUGGGGGAAGAUUGAAAAAACAUAACAAGUUCGUCCUUCUCCAAUGUAUGCUAUUGAUGCAUCUUUUCGACUUGACGCACGUUA
Get precursor sequence
|
Structure | 10 20 30 40 50
GCUUCCGGUUAACGGAG-- AUU - -| A U AAAAACA
AAGGU GUC AUAGUA ACAUUGGGGGA GAU GA \
UUCUA UAG UAUCGU UGUAACCUCUU CUG CU U
AUUGCACGCAGUUCAGCUU CG- U A^ C - UGAACAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | No |
Tissue expression
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Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
No |
No |
No |
No |
No |
No |
No |
No |
No |
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Star sequence |
Ovu-Novel-65_5p* |
mirBase accession | None |
Sequence |
0- AGUAACAUUGGGGGAAGAUUGA -22
Get sequence
|
Mature sequence |
Ovu-Novel-65_3p |
mirBase accession | None |
Sequence |
38- CGUCCUUCUCCAAUGUAUGCUAU -61
Get sequence
|