Mir-130-P4o3

MirGeneDB ID

Pma-Mir-130-P4o3

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-130e

Paralogues

Pma-Mir-130-P1o1 Pma-Mir-130-P1o2 Pma-Mir-130-P1o3 Pma-Mir-130-P2o1 Pma-Mir-130-P2o2 Pma-Mir-130-P4o1

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NW_022638183.1: 736525-736588 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P4o3)

Mir-130-P1o3 NW_022638183.1: 735210-735270 [+] UCSC Ensembl
Mir-130-P4o3 NW_022638183.1: 736525-736588 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCCCUCACCAAACUCCUCUGCAGUCCGGCACCUUUUCAAGUUUGCACUCCUAUGGCGCUCCGUAUGAAGCAGUGCAAUAUUGAAAAAGGGUACGGGACUGCGGGAGCGCGGCCGGGGCCACGG

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Structure

        10          20         30         40        50        60
ACCCCUCACCAAACUCC--        -   GCA  -|      GU       C  AUGGCGC 
                   UCUGCAGU CCG   CC UUUUCAA  UUGCACU CU       U
                   GGGCGUCA GGC   GG AAAAGUU  AACGUGA GA       C
GGCACCGGGGCCGGCGCGA        G   AUG  A^      AU       C  AGUAUGC 
  120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-130-P4o3_5p* (predicted)

mirBase accession

None

Sequence

0- ACCUUUUCAAGUUUGCACUCCU -22

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Mature sequence

Pma-Mir-130-P4o3_3p

mirBase accession

MIMAT0019453

Sequence

40- CAGUGCAAUAUUGAAAAAGGGUAC -64

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