Mir-203-o2-v1

MirGeneDB ID

Pma-Mir-203-o2-v1

Family name

MIR-203 (all species)

Seed

UGAAAUG

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-203b

Paralogues

Pma-Mir-203-o1 Pma-Mir-203-o2-v2 Pma-Mir-203-o3-v1 Pma-Mir-203-o3-v2

Orthologues

Dre-Mir-203-P2-v1 Dre-Mir-203-P2-v2 Gmo-Mir-203-P2-v1 Gmo-Mir-203-P2-v2 Lch-Mir-203 Mal-Mir-203-P2-v1 Mal-Mir-203-P2-v2 Spt-Mir-203 Tni-Mir-203-P2-v1 Tni-Mir-203-P2-v2

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046085.1: 5367436-5367495 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-203-o2-v1)

Mir-203-o2-v1 NC_046085.1: 5367436-5367495 [-] UCSC Ensembl
Mir-203-o2-v2 NC_046085.1: 5367436-5367495 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACGACCGGAUUUGCCAUGGUUACCGAGUGCAGUGGUUCUAACCAGUUCAACAGUUCUCUACUGAAAUUGUGAAAUGUUUAGGACCACUUGACUCGGUAGCUCCAGUUCUGCCCCCCCACC

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Structure

        10          20        30        40        50          
ACGACCGGAUUUGCCAU--|          GC           C  G    A   UUCUCU 
                   GGUUACCGAGU  AGUGGUUCUAA CA UUCA CAG      \
                   UCGAUGGCUCA  UCACCAGGAUU GU AAGU GUU      A
CCACCCCCCCGUCUUGACC^          GU           U  A    -   AAAGUC 
.       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-203-o2-v1_5p*

mirBase accession

MIMAT0019513

Sequence

0- AGUGGUUCUAACCAGUUCAACAG -23

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Mature sequence

Pma-Mir-203-o2-v1_3p

mirBase accession

MIMAT0019514

Sequence

38- GUGAAAUGUUUAGGACCACUUG -60

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